Creating a phytoplankton-fishery observing program for sustaining local communities in Indonesian coastal waters
  • Acronym: FishPhytO
  • Term: June 2023 – March 2026
  • Project Science Team Co-Chairs:
    Mitsutaku Makino (Atmosphere and Ocean Research Institute, The University of Tokyo, Japan)
    Mark Wells (University of Maine, USA)
  • Project Coordinator:
    Alexander Bychkov (PICES)
  • Parent PICES Committee:
    Human Dimensions Committee (HD)
  • Mailing list
Project background, objectives and initiatives

PICES member countries have significant resources for monitoring environmental conditions and fisheries in coastal waters. At the same time, developing nations are far more limited in their capacity to collect data needed to advance their management practices in these waters. Citizen-based monitoring is an approach designed to improve the efficiency and effectiveness of monitoring efforts when technical and financial resources are insufficient. There are many successful examples of citizen-based monitoring in developed countries. However, this approach has not yet been widely applied to collecting environmental and fisheries data in developing nations. Based on such recognition, PICES has conducted two citizen-based monitoring projects funded by the Ministry of Agriculture, Forestry and Fisheries (MAFF) of Japan: “Building capacity for coastal monitoring by local small-scale fishers” (FishGIS: November 2017 – March 2020) and “Building local warning networks for the detection and human dimension of Ciguatera Fish Poisoning in Indonesian communities” (Ciguatera: April 2020 – March 2023).

The overall goal of the project, entitled “Creating a phytoplankton-fishery observing program for sustaining local communities in Indonesian coastal waters” (FishPhytO) is to establish, in collaboration with local fishers, research institutes and universities, the capacity to develop and operate a phytoplankton-fishery observing program in the Lombok Island region (West Nusa Tenggara Province, Indonesia). This project is expected to use tools developed and refined during the previous two PICES/MAFF projects (2017–2023) that enable the detection of toxic benthic Harmful Algal Bloom (HAB) species that can threaten tropical reefs and other coastal fisheries and record images of the fishery catches for enumeration of fish species and sizes. The long-term objectives are to (1) provide local communities with the operational capacity and knowledge to manage their fisheries resources and ensure sustainable seafood safety, and (2) identify research needs for deploying these tools in PICES member countries.

Benthic HAB species, such as the causative organism underlying Ciguatera Fish Poisoning (CFP), arguably have the greatest human health and economic impacts of algal-based poisoning syndrome. CFP occurs when humans consume fish that contain toxins created by benthic microalgae of the dinoflagellate genera Gambierdiscus and Fukuyoa, which are the initial sources of ciguatoxin and are endemic in many tropical Pacific regions. The impact of CFP on the human dimension extends far beyond the proximate health and economic outcomes – chronically impacted communities in the Pacific Region and elsewhere can become fearful of local and other fish sources and transition from these traditional ways of life to one where all protein is imported from foreign sources, altering their cultural heritage. In addition to threats of benthic HABs and CFP in Indonesia, there also are pelagic blooms of toxic algae species (e.g., Alexandrium spp.) that produce potent neurotoxins, which bioaccumulate in both aquaculture and subsistence fisheries, yet there is no comprehensive monitoring of seafood safety for the majority of the Indonesian coastline. With only a handful of plankton experts available to identify when coastal conditions become toxic, Indonesia lacks the capacity to effectively mount the type of HAB monitoring that is common in developed countries.

The problem of toxic algal blooms appears to be increasing globally. Although Ciguatera and other toxin-producing benthic HABs appear in pristine environments, anthropogenic pressures and climate change are leading to its emergence in new regions and intensification in others. There is evidence of range extension of some of these species into the waters of PICES member countries, which is raising significant concerns. The expansion of dead corals and eel-grass habitats that replace healthy corals facilitates intrusion and establishment of exotic populations of toxin-producing benthic algae. Despite the widespread impacts of benthic and other HABs, the resultant health and socioeconomic effects remain poorly understood.

Indonesia is part of the Coral Triangle, the most biodiverse marine area on Earth, and these extensive reefs are vital to maintaining the ecological products that contribute to fisheries in this region. However, presently only about 7% of these coral reefs are in excellent condition, while anthropogenic stressors have left more than 35% in poor condition. Decreasing coral health in Indonesia is a relatively new phenomenon compared to other areas of the world, and the human populations living adjacent to the deteriorating corals are not yet fully aware of the consequences of this change. Current reports of benthic and pelagic HABs occurrences are low in Indonesia, almost certainly because diagnosis is difficult without proper training and experience.

Knowledge transfer is essential. Maintaining a healthy environment is critical to a sustainable relationship between the country and the marine environment. Communities must understand the risks of exposure to keep the impact of benthic HABs to a minimum. The highest risk is when the reefs, that communities depend on for fish, have large patches of dead coral or large seagrass mats, as these surfaces are ideal for the growth of benthic algal cells. Pelagic HABs, on the other hand, are much less predictable, so vigilance with the proper tools is essential. The project will offer technology-assisted, community-based training that drives community awareness of emerging problems and will foster surveillance and management skills that can reduce the incidence of HAB-related illnesses. Communities should engage in three levels of surveillance: the health of the corals and coastal waters, the biology of the benthic and pelagic HAB species, and the harvesting of potentially contaminated fish or bivalves to the communities.

Four long-term goals guide the project. First, consumers will come to rely on information from local communities and researchers about HABs when purchasing marine goods or services. Secondly, the socioeconomic basis of local communities will gain resilience by not depending on products with neurotoxic risks. Thirdly, coral reef health and signals of declining health are better understood by developing nations. Through these capacity-building goals, coastal Indonesian communities can be sustainably improved, with fewer uncertainties and risks from CFP and degradation of coral ecosystems, and the emerging threats of pelagic HABs. The fourth long-term goal, and most directly relevant to PICES, is that lessons learned in this project inform and benefit PICES member countries facing the emergence of climate-driven benthic range extension of HAB species into their marine systems.

The project is proposed to focus on the following major initiatives:

  1. Provide a scientific basis to inform local communities about the influence of benthic HABs on their sustainable use of marine resources. This will be underpinned by developing a database from coastal ecosystem monitoring activities by local fishers and community members to detect ecosystems changes.
  2. Develop automated image analysis strategies for quantifying fisheries-relevant information from image analysis of the smartphone application data collections. These data will be combined with known benthic HAB toxin vectors to inform risk assessments.
  3. Detect the presence of toxin-containing dinoflagellates in the reef environment using two approaches: (a) implementation of smartphone and internet-capable automated microscope and species identification tools developed during the previous PICES/MAFF projects, and (b) employing internationally-standardized sampling protocols for toxic benthic algae.
  4. Training of “local trainers” and community members to utilize these tools and collected data in local decision-making on coastal fisheries regions to avoid the potential transfer of contaminated fish and shellfish from the damaged environment to the tables of families.
To support these primary initiatives, a series of training/capacity building workshops, led by scientists from PICES member countries, is planned to be held in Indonesia. The workshops aim to work with local communities to increase the sustainability of their fishing resources by providing them with HAB information. The combination of training and citizen-science contributions in the project is expected to (1) generate the needed capacity for monitoring HAB hotspots in Indonesian waters, (2) provide valuable datasets for the study of Gambierdiscus, Fukuyoa, Alexandrium, and other toxic algae, along with the factors controlling their abundance in reef and coastal systems, and (3) increase human wellness by identifying fishing regions where the health of community members is at risk.

It is anticipated that besides the primary initiatives, three secondary initiatives will be explored during the project: (1) deploying several new low-cost compact, internet-capable flow-through microscope systems for rapid detection and quantification of pelagic and benthic phytoplankton, (2) developing image analysis libraries for rapid automated identification of toxic species within the generated datasets, and (3) modifying the FishGIS smartphone application with preliminary steps towards artificial intelligence-based assessment of fish stock from the collective fish catch data reported by community members.

Project organization and funding

The request to undertake the FishPhytO project was approved at the inter-sessional PICES Governing Council meeting on May 30, 2023. The first year of the project (June 1, 2023 – March 31, 2024) was funded by MAFF, through the Fisheries Agency of Japan (JFA), from the Official Development Assistance (ODA) Fund. The project principles agreed to by MAFF/JFA and PICES can be found here. Funding for Year 1 (ending March 31, 2024) was set at $73,813.

The project has strong connections with the PICES Scientific Committees on Human Dimensions (HD), Fishery Science (FIS), and Marine Environmental Quality (MEQ) (through the Section on Ecology of Harmful Algal Blooms in the North Pacific – S-HAB), PICES Technical Committees on Data Exchange (TCODE) and on Monitoring (MONITOR), and the PICES FUTURE (Forecasting and Understanding Trends, Uncertainty and Responses of North Pacific Marine Ecosystems) science program (specifically, Research Theme 3 on “How do human activities affect coastal ecosystems and how are societies affected by changes in these ecosystems?”). The HD Committee serves as the parent committee for the project.

To direct the project, a Project Science Team (PST) was formed by the PICES Science Board based on principles and procedures detailed in the the PICES Policy for approval and management of special projects (Decision 2017/A/7). All PICES member countries and all relevant scientific and technical committees, but MONITOR, are represented on the team. (see the PST membership below). Considering the focus of the new project, HD and MEQ have decided to nominate several members. As there are strong links between the FishPhytO project and the previous two PICES/MAFF projects: FishGIS (2017–2020) and Ciguatera (2020–2023), the majority of FishPhytO PST members were involved in one or in both of these projects. As the leading Indonesian collaborators are also those who participated in the previous PICES/MAFF projects, retaining this core group is important to facilitate efficient implementation of the project. Selection of Dr. Mitsutaku Makino (HD Chair, Japan) and Dr. Mark Wells (S-HAB Co-Chair, USA) as FishPhytO PST Co-Chairs warrants the desirable geographical balance and the balance of expertise between the human dimension and HAB components of the project. The PST Co-Chairs are responsible for the detailed planning and execution of the project and annual reporting to MAFF/JFA and to the Science Board through the HD Committee.

Dr. Alexander Bychkov was appointed by the PICES Executive Secretary to serve as the Project Coordinator and is responsible for the management of the fund and annual reporting on its disposition to MAFF/JFA and to the PICES Finance and Administration Committee.

Within PICES, the Science Board takes the responsibility for reporting to the Governing Council on the progress and achievements of the project, and the Finance and Administration Committee takes the responsibility for reporting to the Governing Council on the financial and management aspects of the project.

Project support in Indonesia

The collaboration PICES scientists have developed with the Indonesian government agencies and research institutions during four PICES/MAFF projects conducted in the period from 2007 to 2023 – “Development of the prevention systems for harmful organisms’ expansion in the Pacific Rim” (2007–2012), “Marine ecosystem health and human well-being” (2012–2017; MarWeB), “Building capacity for coastal monitoring by local small-scale fishers” (2017–2020; FishGIS), and “Building local warning networks for the detection and human dimension of Ciguatera Fish Poisoning in Indonesian communities” (2020–2023; Ciguatera) – provides a strong foundation for the FishPhytO project. Connecting with such organizations in a developing country is critical for facilitating and advancing a project – these organizations and key people are needed to understand the project and to translate it into the local context.

The National Research and Innovation Agency of Indonesia (BRIN) has been our major partner since the Ciguatera project (previous major partners, the Indonesian Agency for the Assessment and Application of Technology (BPPT) and the Indonesian Institute of Sciences (LIPI), are now integrated into BRIN). In addition, in March 2022, PICES has signed a Memorandum of Understanding with the Institute of Technology of Indonesia (ITI), with the goal of integrating both faculty expertise and student involvement into the project to enhance its longer-term sustainability. ITI’s focus on the application of technology across environmental science and industry is well suited as a framework for supporting the current and potential future projects in Indonesia. Multiple cooperation agreements among Indonesian national and local government agencies and universities signed during a Ciguatera project’s community training and knowledge dissemination workshop in January 2023 in Lombok have also strengthened support for collaborative research with PICES and the sustainability of the observation network after the project is completed.

In addition, the Provincial Government of West Nusa Tenggara, which provided invaluable assistance in organizing the January 2023 community training and knowledge dissemination workshop, has indicated strong interest in implementing the FishPhytO project. This support is essential for sustaining the planned observation and response activities after completion of the project.

Meetings and Events
  • Third virtual PST meeting (February 2, 2024; 10:00–12:00 Japan Standard Time)
    Objective: to consider options for supporting FishPhytO-related activities after March 31, 2024 when MAFF’s funding ends.
    Third PST meeting summary

  • Second PST meeting (October 20, 2023, in conjunction with PICES-2023 in Seattle, USA)
    Group Photo 1, Group Photo 2
    Objectives: (1) to analyse the outcomes of the July 2023 activities in Indonesia, (2) to assess the current state of data collection in the Lombok/Gili Matra region and the development of a feasible sampling program in Indonesia, (3) to review the updates in the FishGIS smartphone application, and (4) to discuss a workplan for the rest of Year 1 and for Year 2 of the project.
    Presentations:
    • Mitsutaku Makino (PST Co-Chair; AORI, Japan)
      Report of the PICES-MAFF Ciguatera project and introduction to the PICES-MAFF FishPhytO project
    • Suhendar I Sachoemar (BRIN, Indonesia)
      Data collection (phytoplankton, HydroColour, FishGIS)
    • Shion Takemura (FRA, Japan)
      FishGIS smartphone application update
    Second PST meeting summary

  • First PST meeting (July 8, 2023; Lombok, Indonesia)
    Objectives: (1) to review the outcomes of the July 2023 training workshop in Lombok, Indonesia, and (2) to discuss a workplan for Year 1 of the project in order to set up a logistically feasible sampling program for benthic phytoplankton and fisheries in the Lombok/Gili Matra region so that data collection can begin early in the project.
    First PST meeting summary

  • Community training and knowledge dissemination workshop (July 5–7, 2023; Lombok, Indonesia)
    Objectives: (1) to disseminate information to the broad spectrum of participants about fisheries management and the hazards of benthic HABs in Indonesian coastal areas, (2) to provide technical, hands-on training on the use of smartphone-based tools for monitoring of fisheries resources (FishGIS) and environmental health conditions (HydroColor), and on the use of Planktoscope for quantifying benthic and pelagic phytoplankton, and (3) to communicate the consequence of changes to the marine resources on the community fishers.

    The workshop was organized in collaboration with ITI, BRIN, WNT-BRIDA (West Nusa Tenggara Regional Research and Innovation Agency) and the University of Mataram (UNRAM), and supported by a generous contribution of $9,244 from the Atmosphere and Ocean Research Institute of the University of Tokyo.

    In order to align this training with a local-based sampling program for both benthic phytoplankton and fisheries that could continue on a regular basis, the workshop focus was on local University students, along with local community members, who are willing to implement sample collections and analysis.

  • General lecture on “Creating a phytoplankton-fishery observing program for sustaining local communities in Indonesian coastal waters” (July 4, 2023; ITI (Institut Teknologi Indonesia) Campus, Serpong, South Tangerang, Indonesia)
    Objective: through a series of lectures by FishPhytO PST members and Indonesian scientists, to disseminate information about fisheries management and the hazards of benthic HABs in Indonesian coastal areas, and to communicate the project background, principles and goals to the broad audience that included students, scientists and engineers from academia, research institutions and industry, and government officials from Tangerang Region and Banten Province (approximately 100 people were in attendance).
    Presentations:
Products
Annual Progress Reports (PR)
Progress Report for Year 1 (June 1, 2023 – March 31, 2024)
Annual Financial Reports (FR)
Financial Report for Year 1 (June 1, 2023 – March 31, 2024)
PICES Press
TBA
Media Coverage
TBA
Project Science Team members
Daisuke Ambe
(representing TCODE)
Fisheries Research and Education Agency
2-12-4 Fukuura, Kanazawa-ku
Yokohama, Kanagawa, 236-8648
Japan
E-mail: ambe@affrc.go.jp
Seung Ho Baek
(representing MEQ)
South Sea Research Institute
Korea Institute of Ocean Science and Technology
41 Jangmok-1-gil, Jangmok-myon Geoje, 5320
Republic of Korea
E-mail: baeksh@kiost.ac.kr
Vladimir Kulik
Pacific Branch of VNIRO (“TINRO”)
4 Shevchenko Alley
Vladivostok, Primorsky Kray, 690091
Russia
E-mail: vladimir.kulik@tinro-center.ru
Mitsutaku Makino
Project Science Team Co-Chair
(representing HD)
Atmosphere and Ocean Research Institute
The University of Tokyo
5-1-5, Kashiwanoha, Kashiwa-shi, Chiba, 277-8564
Japan
E-mail: mmakino@aori.u-tokyo.ac.jp
Moonho Son
(representing MEQ)
JNational Institute of Fisheries Science
216 Gijanghaean-ro, Gijang-eup, Gijang-gun
Busan, 46083
Republic of Korea
E-mail: muno77@korea.kr
Shion Takemura
(representing HD)
Japan Fisheries Research and Education Agency
2-12-4 Fukuura, Kanazawa-ku
Yokohama, Kanagawa, 236-8648
Japan
E-mail: shiontakemura@affrc.go.jp
Naoki Tojo
(representing FIS)
Faculty of Fisheries Sciences
Hokkaido University
3-1-1, Minato-cho, Hakodate, 041-8611
Japan
E-mail: n.tojo.raven@fish.hokudai.ac.jp
Vera Trainer
(representing MEQ)
Olympic Natural Resources Center
University of Washington
1455 S. Forks Ave., Forks, WA 98331
U.S.A.
E-mail: verat@uw.edu
Charles Trick
(representing MEQ)
Institute for Inclusive Health and Well-Being
University of Toronto
1265 Military Trail
Toronto, ON, M1C 1A4
Canada
E-mail: charles.trick@utoronto.ca
Pengbin Wang
(representing MEQ)
Second Institute of Oceanography
Ministry of Natural Resources
36 Baochubei Rd.
Hangzhou, Zhejiang, 310012
People’s Republic of China
E-mail: algae@sio.org.cn
Mark Wells
Project Science Team Co-Chair
(representing MEQ)
School of Marine Sciences
University of Maine
5741 Libby Hall
Orono, ME, 04469
U.S.A.
E-mail: mlwells@maine.edu
Alexander Bychkov
(ex-officio)
PICES Secretariat
9860 West Saanich Road
Sidney, BC, V8L 4B2
Canada
E-mail: bychkov@pices.int